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Category: ARUZ

Parallel model of chemical reactions on a grained molecular level,

Parallel model of chemical reactions on a grained molecular level

ARUZ, HPC August 2, 2023 Journal: Computer Physics Communications Publication date: 2 August 2023 DOI: 10.1016/j.cpc.2023.108884 Access type: Open access (direct link) Link: http://dx.doi.org/10.1016/j.cpc.2023.108884   Abstract In this paper, the model of chemical reactions on grained molecular level is presented. This model allows simulating simple...
Simulation of diffusion in dense molecular systems on ARUZ – Massively-parallel FPGA-based machine,

Simulation of diffusion in dense molecular systems on ARUZ – Massively-parallel FPGA-based machine

ARUZ, HPC November 11, 2022 Journal: Computer Physics Communications Publication date: 11 November 2022 DOI: 10.1016/j.cpc.2022.108591 Access type: Paid (Elsevier) Link: http://dx.doi.org/10.1016/j.cpc.2022.108591   Abstract In this paper, the implementation of a molecular diffusion model named Dynamic Lattice Liquid (DLL) is discussed. Two algorithms, sequential and parallel, implementing this model...
Molecular Diffusion Simulation on ARUZ – Massively-parallel FPGA-based Machine,

Molecular Diffusion Simulation on ARUZ – Massively-parallel FPGA-based Machine

ARUZ, HPC July 30, 2021 Journal: 2021 28th International Conference on Mixed Design of Integrated Circuits and System Publication date: 30 lipca 2021 DOI: 10.3390/electronics9091482 Access type: Paid (IEEEXplorer) Link: http://dx.doi.org/10.23919/MIXDES52406.2021.9497622   Abstract In this paper, the implementation of a molecular diffusion model named Dynamic...
Methodology of Firmware Development for ARUZ — An FPGA-Based HPC System,

Methodology of Firmware Development for ARUZ — An FPGA-Based HPC System

ARUZ, HPC September 10, 2020 Journal: MDPI Electronics Publication date: 10 September 2020 DOI: 10.3390/electronics9091482 Access type: Open Access (direct link) Link: http://dx.doi.org/10.3390/electronics9091482   Abstract ARUZ is a large scale, massively parallel, FPGA-based reconfigurable computational system dedicated primarily to molecular analysis. This paper presents a...
ARUZ — Large-scale, massively parallel FPGA-based analyzer of real complex systems,

ARUZ — Large-scale, massively parallel FPGA-based analyzer of real complex systems

ARUZ, HPC November 1, 2018 Journal: Computer Physics Communications Publication date: 1 November 2018 DOI: 10.1016/j.cpc.2018.06.010 Access type: Paid Access (Elsevier) Link: https://doi.org/10.1016/j.cpc.2018.06.010   Abstract This paper presents general information about ARUZ, a scalable, fully parallel data processing system equipped with low-latency communication channels, designed for simulations of...